Hi.
I have a tab separated file that has a couple nearly identical lines. When doing:
sort file | uniq > file.new
It passes through the nearly identical lines because, well, they still are unique.
a)
I want to look only at field x for uniqueness and if the content in field x is the... (1 Reply)
Hi,
Is there any short method to print from a particular field till another filed using awk?
Example File:
File1
====
1|2|acv|vbc|......|100|342
2|3|afg|nhj|.......|100|346
Expected output:
File2
====
acv|vbc|.....|100
afg|nhj|.....|100 (8 Replies)
Hello;
I have a file consists of 4 columns separated by tab. The problem is the third fields. Some of the them are very long but can be split by the vertical bar "|". Also some of them do not contain the string "UniProt", but I could ignore it at this moment, and sort the file afterwards. Here is... (5 Replies)
I'm trying to compare 2 files for differences in a selct number of fields. When differnces are found it will write the whole record of the second file including appending '|C' out to a delta file. Each record will have 20 fields, but only want to do comparison of 1st 15 fields. The 1st field of... (7 Replies)
Hi
I have a file as below
<field1> <field2> <field3> ... <field_num1> <field_num2>
Trying to sort based on difference of <field_num1> and <field_num2> in desceding order and print all fields.
I tried this and it doesn't sort on the difference field .. Appreciate your help.
cat... (9 Replies)
The below code works great, kindly provided by @Don Cragun, the lines in bold print the current output. Since some of the fields printed can be blank some of the fields are shifted. I can not seem too add . to the blank fields like in the desired output. Basically, if there is nothing in the field... (10 Replies)
In the below I am trying to use awk to match all the $13 values in input, which is tab-delimited,
that are in $1 of gene which is just a single column of text.
However only the line with the greatest $9 value in input needs to be printed.
So in the example below all the MECP2 and LTBP1... (0 Replies)
In the awk below I am trying to print the entire line, along with the header row, if $2 is SNV or MNV or INDEL. If that condition is met or is true, and $3 is less than or equal to 0.05, then in $7 the sub pattern :GMAF= is found and the value after the = sign is checked. If that value is less than... (0 Replies)
Discussion started by: cmccabe
0 Replies
LEARN ABOUT REDHAT
pdl::char
Char(3) User Contributed Perl Documentation Char(3)NAME
PDL::Char -- PDL subclass which allows reading and writing of fixed-length character strings as byte PDLs
SYNOPSIS
use PDL;
use PDL::Char;
my $pchar = PDL::Char->new( [['abc', 'def', 'ghi'],['jkl', 'mno', 'pqr']] );
$pchar->setstr(1,0,'foo');
print $pchar; # 'string' bound to "", perl stringify function
# Prints:
# [
# ['abc' 'foo' 'ghi']
# ['jkl' 'mno' 'pqr']
# ]
print $pchar->atstr(2,0);
# Prints:
# ghi
DESCRIPTION
This subclass of PDL allows one to manipulate PDLs of 'byte' type as if they were made of fixed length strings, not just numbers.
This type of behavior is useful when you want to work with charactar grids. The indexing is done on a string level and not a character
level for the 'setstr' and 'atstr' commands.
This module is in particular useful for writing NetCDF files that include character data using the PDL::NetCDF module.
FUNCTIONS
new
Function to create a byte PDL from a string, list of strings, list of list of strings, etc.
# create a new PDL::Char from a perl array of strings
$strpdl = PDL::Char->new( ['abc', 'def', 'ghij'] );
# Convert a PDL of type 'byte' to a PDL::Char
$strpdl1 = PDL::Char->new (sequence (byte, 4, 5)+99);
$pdlchar3d = PDL::Char->new([['abc','def','ghi'],['jkl', 'mno', 'pqr']]);
string
Function to print a character PDL (created by 'char') in a pretty format.
$char = PDL::Char->new( [['abc', 'def', 'ghi'], ['jkl', 'mno', 'pqr']] );
print $char; # 'string' bound to "", perl stringify function
# Prints:
# [
# ['abc' 'def' 'ghi']
# ['jkl' 'mno' 'pqr']
# ]
# 'string' is overloaded to the "" operator, so:
# print $char;
# should have the same effect.
setstr
Function to set one string value in a character PDL. The input position is the position of the string, not a character in the string. The
first dimension is assumed to be the length of the string.
The input string will be null-padded if the string is shorter than the first dimension of the PDL. It will be truncated if it is longer.
$char = PDL::Char->new( [['abc', 'def', 'ghi'], ['jkl', 'mno', 'pqr']] );
$char->setstr(0,1, 'foobar');
print $char; # 'string' bound to "", perl stringify function
# Prints:
# [
# ['abc' 'def' 'ghi']
# ['foo' 'mno' 'pqr']
# ]
$char->setstr(2,1, 'f');
print $char; # 'string' bound to "", perl stringify function
# Prints:
# [
# ['abc' 'def' 'ghi']
# ['foo' 'mno' 'f'] -> note that this 'f' is stored "f "
# ]
atstr
Function to fetch one string value from a PDL::Char type PDL, given a position within the PDL. The input position of the string, not a
character in the string. The length of the input string is the implied first dimension.
$char = PDL::Char->new( [['abc', 'def', 'ghi'], ['jkl', 'mno', 'pqr']] );
print $char->atstr(0,1);
# Prints:
# jkl
perl v5.8.0 2001-05-27 Char(3)