so I'm using AWK in a project at work, to generate xml from csv. So far things are going relatively smoothly, but I have one thing I can't figure out.
For every field in each row, I must generate
Then I will need to pull data from a second file and generate
Disregarding the multi file input, which I haven't even began working on yet, how can I increment the value of "x" for each successive field in the record? Every time I try to use a variable, it pulls the value for that numbered field. For example, if I have PROJECT NUMBER in the first field, PROJECT NAME in the second, and USERID in the third, I want an output of:
This is probably the dumbest question ever, but I can't seem to use any variables without them providing the data inside that numbered field. Also, some rows won't have certain fields, so hardcoding the KW number for each column will not work (and would be a very sloppy solution anyway).
I need a hand with this simple script,
in Unix i have a variable called portal:
$ echo $portal
chu0
when i use awk this variable is not recognized. How can i make awk recognize and print the value of this variable, since the output is not shown i.e.
awk '
BEGIN {printf("%4s\t%14s\n",... (3 Replies)
when I execute this awk stmt ..
awk "/log_directory/ { print $5}" /opt/dba/oraadmin/tools/tmp_purge_op.log
it's returning the whole line as ..
IRMD118_LISTENER1 parameter "log_directory" set to /opt/oracle/10.2/network/log/
my expected output is : /opt/oracle/10.2/network/log
what... (7 Replies)
Whats the syntax to find all lines that matches a text and print out specific fields after the match?
ex:
1: some random text
2: Full name: John E. Smith
3: some random text
4: Full name: Mary J. Lue
5: some random text
So I'd like to print out First names or last names or everything... (2 Replies)
Hi,
I just don't understand awk. I think I'm close here but can someone give me a hand to finish this little parsing routine ?
the input file is formatted like this:
District 2502110
Gsub 2384889
Gsub 1428180
District 2502220
Gsub 1466390
Gsub 1466389
Gsub 1466388
Gsub 1466386
Gsub... (4 Replies)
awk '!_++'
Most importantly, I want to know what the underscore does "!_"
But ideally, please breakdown the whole thing. It is supposed to remove duplicate lines when found in a file. (1 Reply)
Hello;
Trying to figure out how to keep just the contents between the two search lines:
awk '/regexp_1/ ,/regexp_2/'
I do not want lines containing regexp_1 and regexp_2 in the output.
Thank you for any ideas
Video tutorial on how to use code tags in The UNIX and Linux Forums. (5 Replies)
Hello;
I need to print two previous lines after searching for a reg exp:
awk '/haywood/'
should produce the following
===================
p9J46THe020804 89922 Tue Oct 18 21:06 MAILER-DAEMON
(host map: lookup (haywood.com): deferred)
... (1 Reply)
Hi,
I'm new to AWK and I'm having problems comparing a field to a string variable.
/ARTIST/ {x = $2}
$1 ~ x {print $0}My code tries to find a record with the string "ARTIST". Once it finds it, it stores the second field of the record into a variable. I don't know what the problem is for the... (7 Replies)
Hi,
I have a file such that:
40454,31,48,4,1304.967741935484,1
31708,25,48,4,1268.32,1
20900,64501,671,788,0.3240259840932699,0
20137,51358,834,743,0.3920908135051988,0
I want to replace the 6th column by "ones" if it is 1, and with "zeros" if it is 0.
Thanks. (6 Replies)
Hi, this must be a simple but this is my first interaction with shell and awk.
following is a log file needed to parse (2 lines separated by a line break for clarity):
2013-07-27 13:32:09,043 - ERROR - PerformanceUtility - Thread-14 - Performance - 9b348407-4f57-4983-a057-a55669821f68 |... (12 Replies)
Discussion started by: liv2luv
12 Replies
LEARN ABOUT DEBIAN
ace::sequence::transcript
Ace::Sequence::Transcript(3pm) User Contributed Perl Documentation Ace::Sequence::Transcript(3pm)NAME
Ace::Sequence::Transcript - Simple "Gene" Object
SYNOPSIS
# open database connection and get an Ace::Object sequence
use Ace::Sequence;
# get a megabase from the middle of chromosome I
$seq = Ace::Sequence->new(-name => 'CHROMOSOME_I,
-db => $db,
-offset => 3_000_000,
-length => 1_000_000);
# get all the transcripts
@genes = $seq->transcripts;
# get the exons from the first one
@exons = $genes[0]->exons;
# get the introns
@introns = $genes[0]->introns
# get the CDSs (NOT IMPLEMENTED YET!)
@cds = $genes[0]->cds;
DESCRIPTION
Ace::Sequence::Gene is a subclass of Ace::Sequence::Feature. It inherits all the methods of Ace::Sequence::Feature, but adds the ability
to retrieve the annotated introns and exons of the gene.
OBJECT CREATION
You will not ordinarily create an Ace::Sequence::Gene object directly. Instead, objects will be created in response to a transcripts()
call to an Ace::Sequence object.
OBJECT METHODS
Most methods are inherited from Ace::Sequence::Feature. The following methods are also supported:
exons()
@exons = $gene->exons;
Return a list of Ace::Sequence::Feature objects corresponding to annotated exons.
introns()
@introns = $gene->introns;
Return a list of Ace::Sequence::Feature objects corresponding to annotated introns.
cds()
@cds = $gene->cds;
Return a list of Ace::Sequence::Feature objects corresponding to coding sequence. THIS IS NOT YET IMPLEMENTED.
relative()
$relative = $gene->relative;
$gene->relative(1);
This turns on and off relative coordinates. By default, the exons and intron features will be returned in the coordinate system used
by the gene. If relative() is set to a true value, then coordinates will be expressed as relative to the start of the gene. The first
exon will (usually) be 1.
SEE ALSO
Ace, Ace::Object, Ace::Sequence,Ace::Sequence::Homol, Ace::Sequence::Feature, Ace::Sequence::FeatureList, GFF
AUTHOR
Lincoln Stein <lstein@cshl.org> with extensive help from Jean Thierry-Mieg <mieg@kaa.crbm.cnrs-mop.fr>
Copyright (c) 1999, Lincoln D. Stein
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for
disclaimers of warranty.
POD ERRORS
Hey! The above document had some coding errors, which are explained below:
Around line 168:
You forgot a '=back' before '=head1'
perl v5.14.2 2001-05-22 Ace::Sequence::Transcript(3pm)