Scrutinizer,
I am afraid I do not understand your script. I get some error when trying to run the script.
Am I missing something?
X ---------- Post updated at 05:25 PM ---------- Previous update was at 05:24 PM ----------
Hanson44,
Sheel scripting will be ok too.
Thanks!
X
I've been working on getting a script to take size, dir name and file name variables from an input file and creating the same dir structure along with the file of specific size.
An example of the input file:
size/dirname/filename
2100/JAN_06/12345ABC.TCC
2354/FEB_06/24564XYZ.NOS... (2 Replies)
I have a directory of files that look like filename 001.ext, filename 002.ext, etc. I'd like to rename the files with unique random numbered names, so that the original filenames are stripped and the files are given a new, random number name. I'm not super new to UNIX, but I don't often use it for... (2 Replies)
Hi,
I've list of files in a directory, which have date stamp value in their names.
ex:
abc_data_20071102.csv,
abc_data_20091221.csv,
abc_data_20100110.csv,
abc_data_20100222.csv,
abc_data_20080620.csv,... etc.,
I need to select and process only files, within the given date... (4 Replies)
My files look like this
And I need to cut the sequences at the last "A" found in the following 'pattern' -highlighted for easier identification, the pattern is the actual file is not highlighted.
The expected result should look like this
Thus, all the sequences would end with AGCCCTA... (2 Replies)
My file looks like this
But I need to remove the entry with the identifier >Reference1 along with the entire sequence. Thus, I will end up having the following file
Thanks in advance! (2 Replies)
I have two files with thousands of sequences of different lengths. infile1 contains the actual sequences and infile2 the scores for each A, T, G and C in infile1. Something like this:
infile1:
>HZVJKYI01ECH5R
TTGATGTGCCAGCTGCCGTTGGTGTGCCAA
>HZVJKYI01AQWJ8
GGATATGATGATGAACTGGTTTGGCACACC... (4 Replies)
I have two directories Dir_A and Dir_A_Arc. Need help with a shell script.
The shell script needs to take the path to these two directories as parameters $1 and $2.
The script needs to check if any files exist in these directories and if either of the directories are empty then exit... (5 Replies)
Hello All,
May i please know how do i ensure my split command would NOT generate incomplete output files like below, the last lines in each file is missing some columns or last line is complete.
split -b 50GB File File_
File_aa
|551|70210203|xxxxxxx|12/22/2010 20:44:58|11/01/2010... (1 Reply)
Hi,
I have to add 7 bases of specific nucleotide at the beginning and ending of all the fasta sequences of a file. For example, I have a multi fasta file namely test.fasta as given below
test.fasta
>TalAA18_Xoo_CIAT_NZ_CP033194.1:_2936369-2939570:+1... (1 Reply)
Discussion started by: dineshkumarsrk
1 Replies
LEARN ABOUT BSD
join
JOIN(1) General Commands Manual JOIN(1)NAME
join - relational database operator
SYNOPSIS
join [ options ] file1 file2
DESCRIPTION
Join forms, on the standard output, a join of the two relations specified by the lines of file1 and file2. If file1 is `-', the standard
input is used.
File1 and file2 must be sorted in increasing ASCII collating sequence on the fields on which they are to be joined, normally the first in
each line.
There is one line in the output for each pair of lines in file1 and file2 that have identical join fields. The output line normally con-
sists of the common field, then the rest of the line from file1, then the rest of the line from file2.
Fields are normally separated by blank, tab or newline. In this case, multiple separators count as one, and leading separators are dis-
carded.
These options are recognized:
-an In addition to the normal output, produce a line for each unpairable line in file n, where n is 1 or 2.
-e s Replace empty output fields by string s.
-jn m Join on the mth field of file n. If n is missing, use the mth field in each file.
-o list
Each output line comprises the fields specified in list, each element of which has the form n.m, where n is a file number and m is a
field number.
-tc Use character c as a separator (tab character). Every appearance of c in a line is significant.
SEE ALSO sort(1), comm(1), awk(1)BUGS
With default field separation, the collating sequence is that of sort -b; with -t, the sequence is that of a plain sort.
The conventions of join, sort, comm, uniq, look and awk(1) are wildly incongruous.
7th Edition April 29, 1985 JOIN(1)