Scrutinizer,
I am afraid I do not understand your script. I get some error when trying to run the script.
Am I missing something?
X ---------- Post updated at 05:25 PM ---------- Previous update was at 05:24 PM ----------
Hanson44,
Sheel scripting will be ok too.
Thanks!
X
I've been working on getting a script to take size, dir name and file name variables from an input file and creating the same dir structure along with the file of specific size.
An example of the input file:
size/dirname/filename
2100/JAN_06/12345ABC.TCC
2354/FEB_06/24564XYZ.NOS... (2 Replies)
I have a directory of files that look like filename 001.ext, filename 002.ext, etc. I'd like to rename the files with unique random numbered names, so that the original filenames are stripped and the files are given a new, random number name. I'm not super new to UNIX, but I don't often use it for... (2 Replies)
Hi,
I've list of files in a directory, which have date stamp value in their names.
ex:
abc_data_20071102.csv,
abc_data_20091221.csv,
abc_data_20100110.csv,
abc_data_20100222.csv,
abc_data_20080620.csv,... etc.,
I need to select and process only files, within the given date... (4 Replies)
My files look like this
And I need to cut the sequences at the last "A" found in the following 'pattern' -highlighted for easier identification, the pattern is the actual file is not highlighted.
The expected result should look like this
Thus, all the sequences would end with AGCCCTA... (2 Replies)
My file looks like this
But I need to remove the entry with the identifier >Reference1 along with the entire sequence. Thus, I will end up having the following file
Thanks in advance! (2 Replies)
I have two files with thousands of sequences of different lengths. infile1 contains the actual sequences and infile2 the scores for each A, T, G and C in infile1. Something like this:
infile1:
>HZVJKYI01ECH5R
TTGATGTGCCAGCTGCCGTTGGTGTGCCAA
>HZVJKYI01AQWJ8
GGATATGATGATGAACTGGTTTGGCACACC... (4 Replies)
I have two directories Dir_A and Dir_A_Arc. Need help with a shell script.
The shell script needs to take the path to these two directories as parameters $1 and $2.
The script needs to check if any files exist in these directories and if either of the directories are empty then exit... (5 Replies)
Hello All,
May i please know how do i ensure my split command would NOT generate incomplete output files like below, the last lines in each file is missing some columns or last line is complete.
split -b 50GB File File_
File_aa
|551|70210203|xxxxxxx|12/22/2010 20:44:58|11/01/2010... (1 Reply)
Hi,
I have to add 7 bases of specific nucleotide at the beginning and ending of all the fasta sequences of a file. For example, I have a multi fasta file namely test.fasta as given below
test.fasta
>TalAA18_Xoo_CIAT_NZ_CP033194.1:_2936369-2939570:+1... (1 Reply)
Discussion started by: dineshkumarsrk
1 Replies
LEARN ABOUT REDHAT
unshar
UNSHAR(1) General Commands Manual UNSHAR(1)NAME
unshar - unpack a shar file
SYNOPSIS
unshar [ options ] [ file ... ]
DESCRIPTION
Unshar scans mail messages looking for the start of a shell archive. It then passes the archive through a copy of the shell to unpack it.
It will accept multiple files. If no files are given, standard input is used.
OPTIONS
Options have a one letter version starting with - or a long version starting with --. The exception is --help and --version, which does
not have a short version.
--version
Print the version number of the program on standard output, then immediately exits.
--help Print a help summary on standard output, then immediately exits.
-d DIRECTORY --directory=DIRECTORY
Change directory to DIRECTORY before unpacking any files.
-c--overwrite
Passed as an option to the shar file. Many shell archive scripts (including those produced by `shar' 3.40 and newer) accepts a -c
argument to indicate that existing files should be overwritten.
-e--exit-0
This option exists mainly for people who collect many shell archives into a single mail folder. With this option, `unshar' isolates
each different shell archive from the others which have been put in the same file, unpacking each in turn, from the beginning of the
file towards its end. Its proper operation relies on the fact that many shar files are terminated by a `exit 0' at the beginning of
a line.
Option -e is internally equivalent to -E "exit 0".
-E STRING --split-at=STRING
This option works like -e, but it allows you to specify the string that separates archives if `exit 0' isn't appropriate.
For example, noticing that most `.signatures' have a `--' on a line right before them, one can sometimes use `--split-at=--' for
splitting shell archives which lack the `exit 0' line at end. The signature will then be skipped altogether with the headers of the
following message.
-f--force
The same as -c.
SEE ALSO shar(1)DIAGNOSTICS
Any message from the shell may be displayed.
AUTHORS
The shar and unshar programs is the collective work of many authors. Many people contributed by reporting problems, suggesting various
improvements or submitting actual code. A list of these people is in the THANKS file in the sharutils distribution.
September 10, 1995 UNSHAR(1)