Originally Posted by Don Cragun
In you output samples, the lines in each set of output files are all in the order in which they appeared in the input files. Is that a requirement for your output, or is it just a coincidence in the random numbers used for your example?
With truly random numbers, the output could contain more than one copy of some output lines. Is it a requirement that the output lines be unique?
Isn't that a matter of sampling with/without replacement?
Yes. My 2nd question was whether the output is sampling with or without replacement. And, Xterra has responded that each output set is to use sampling without replacement.
My 1st question was whether the random sequences 1, 3, 5 and 1, 5, 3 (and the six other orders of those three values) are to be treated as 8 distinct output sequences or they should all be normalized to the single sequence where the output lines are in the same order as they were in the input files. That question hasn't been answered yet, so I'm assuming they are to be treated as distinct sequences. (I expect to have an awk program with a shell wrapper to set options later today unless someone else comes up with working solution 1st.)
---------- Post updated at 05:45 ---------- Previous update was at 01:24 ----------
I believe this script does what was requested with considerable (although not complete) error checking. I use the Korn shell (and tested this script using it), but this should work with any POSIX conforming shell. If you are using a Solaris/SunOS system, use /usr/xpg4/bin/awk or nawk instead of awk:
I've been working on getting a script to take size, dir name and file name variables from an input file and creating the same dir structure along with the file of specific size.
An example of the input file:
size/dirname/filename
2100/JAN_06/12345ABC.TCC
2354/FEB_06/24564XYZ.NOS... (2 Replies)
I have a directory of files that look like filename 001.ext, filename 002.ext, etc. I'd like to rename the files with unique random numbered names, so that the original filenames are stripped and the files are given a new, random number name. I'm not super new to UNIX, but I don't often use it for... (2 Replies)
Hi,
I've list of files in a directory, which have date stamp value in their names.
ex:
abc_data_20071102.csv,
abc_data_20091221.csv,
abc_data_20100110.csv,
abc_data_20100222.csv,
abc_data_20080620.csv,... etc.,
I need to select and process only files, within the given date... (4 Replies)
My files look like this
And I need to cut the sequences at the last "A" found in the following 'pattern' -highlighted for easier identification, the pattern is the actual file is not highlighted.
The expected result should look like this
Thus, all the sequences would end with AGCCCTA... (2 Replies)
My file looks like this
But I need to remove the entry with the identifier >Reference1 along with the entire sequence. Thus, I will end up having the following file
Thanks in advance! (2 Replies)
I have two files with thousands of sequences of different lengths. infile1 contains the actual sequences and infile2 the scores for each A, T, G and C in infile1. Something like this:
infile1:
>HZVJKYI01ECH5R
TTGATGTGCCAGCTGCCGTTGGTGTGCCAA
>HZVJKYI01AQWJ8
GGATATGATGATGAACTGGTTTGGCACACC... (4 Replies)
I have two directories Dir_A and Dir_A_Arc. Need help with a shell script.
The shell script needs to take the path to these two directories as parameters $1 and $2.
The script needs to check if any files exist in these directories and if either of the directories are empty then exit... (5 Replies)
Hello All,
May i please know how do i ensure my split command would NOT generate incomplete output files like below, the last lines in each file is missing some columns or last line is complete.
split -b 50GB File File_
File_aa
|551|70210203|xxxxxxx|12/22/2010 20:44:58|11/01/2010... (1 Reply)
Hi,
I have to add 7 bases of specific nucleotide at the beginning and ending of all the fasta sequences of a file. For example, I have a multi fasta file namely test.fasta as given below
test.fasta
>TalAA18_Xoo_CIAT_NZ_CP033194.1:_2936369-2939570:+1... (1 Reply)