03-23-2013
Hw abt wrt n pln Nglsh?
Nd, dnt hijack oths' threads!
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1. Shell Programming and Scripting
I 'm trying to grep 2 fieldds on 2 differnt lines. Like this:
psit > file
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Gundu (13 Replies)
Discussion started by: gundu
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2. Shell Programming and Scripting
Hey guys:
I've been meaning to post this question for awhile...it is regarding grep. Let's say for example that the following entry is in logxx:
Wed Feb 2 07:44:11 <vsm> 91030 Line 5 Severity 1 Vps 6
Call Answered - DN:8753101 CLID:5164665761 PI:83
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Hi.
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4. Shell Programming and Scripting
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I want to search files (basically .cc files) in /xx folder and subfolders.
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hi
i have kind of below text in a file.
I want to get a complete paragraph starting with START and ending with before another START) which has a particular string say XYZ or ABC
START XYZ hshjghkjh 45 ljkfd
fldjlj d jldf
START 3493u ABC 454
4545454
4545454 45454
4545454
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How do you grep 'select * from table_name' string from a script if the select * and from table_name are on 2 different lines ? like
select *
from table_name
Any help would be greatly appreciated !!!
Thanks
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I have 1300 files (SearchFiles0001.txt, SearchFiles0002.txt, etc.) , each with 650,000 lines, tab-delimited data.
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I want to grep multiple lines from a text file. I want to grep all lines containing X,Y and NA in a single command. How do I go about doing that?
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rs1983866 0.0983 10 100016313
rs1983865 0.5994 X 100016339
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Hi Everyone,
Im currently using the below code to pull data from a large CSV file and put it into smaller files with just the data associated with the number that I "grep".
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LEARN ABOUT DEBIAN
bio::seqio::pln
Bio::SeqIO::pln(3pm) User Contributed Perl Documentation Bio::SeqIO::pln(3pm)
NAME
Bio::SeqIO::pln - pln trace sequence input/output stream
SYNOPSIS
Do not use this module directly. Use it via the Bio::SeqIO class.
DESCRIPTION
This object can transform Bio::Seq objects to and from pln trace files.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one
of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHORS - Aaron Mackey
Email: amackey@virginia.edu
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
next_seq
Title : next_seq
Usage : $seq = $stream->next_seq()
Function: returns the next sequence in the stream
Returns : Bio::Seq::Quality object
Args : NONE
write_seq
Title : write_seq
Usage : $stream->write_seq(@seq)
Function: writes the $seq object into the stream
Returns : 1 for success and 0 for error
Args : Bio::Seq object
perl v5.14.2 2012-03-02 Bio::SeqIO::pln(3pm)