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How to extract data for a specific process from ovpa?
Post 302781299 by kunwar on Saturday 16th of March 2013 01:35:33 AM
03-16-2013
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.
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My input:
>seq_1
DSASSTRRARRRRTPRTPSLRSRRSDVTCS
>seq_3
RMRLRRWRKSCSERS*RRSN
>seq_8
RTTGLSERPRLPTTASRSISSRWTR
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NELPLEKGSLDSISIE
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QVQHRRHDHSRTQH*LCRRRQREDCDRLHR
>seq_4
DRGKGQAGCRRPQEGEALVRRCS>seq_6
FA*GLAAQDGEA*SGRG
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My input:
Data name: ABC001
Data length: 1000
Detail info
Data Direction Start_time End_time Length
1 forward 10 100 90
1 forward 15 200 185
2 reverse 50 500 450
Data name: XFG110
Data length: 100
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Input file:
#abc_1
SAASFASFGGDSGDSGDSGSDGSDGSDGSDGSDGSDGSDGDS
Output file:
FASFGGDSGDS
I just want to print out the read from position 5 until position 15 from the data.
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Input:
HS04636 PROGRAM source 836 7001 + ID=g1
HS04636 PROGRAM beginner 836 7001 + ID=g1.t1;Parent=g1
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HS04636 PROGRAM type 836 1017 + Parent=g1.t1
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<SERVER>:WEB:MYDOM01:/tmp/cong/MYDOM01,/tmp/app/MYDOM01
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LEARN ABOUT DEBIAN
ift-extract
I2M19058(1) GNU Info I2M19058(1) NAME
ift-extract.info - ift-extract.info Built-in iSight firmware extractor and patcher ift-extract extract the Built-in iSight firmware from Apple driver and patch it to avoid some bugs in it. The firmware is then ready to get loaded into the chip using ift-load. * Menu: Finding the Apple driver: see "Driver" Command line options: see "Options" See also "Copying" 1 Finding the Apple driver ift-extract extract Built-in iSight firmware from Apple iSight driver. This driver is located at /System/Library/Extensions/IOUSBFamily.kext/Contents/PlugIns/AppleUSBVideoSupport.kext/Contents/MacOS/AppleUSBVideoSupport on your Mac OS X root partition. There is several version of this driver depending on driver version or host architecture (PowerPC or x86). Thus, ift-extract must determine know the variant of the driver in order to properly extract the firmware. Any AppleUSBVideoSupport file starting with those shipped with iMac G5 iSight must work. If not, please report unknown AppleUSBVideoSupport at bugreport mail address with machine type and OS X version. 2 Command line options `-a' `--apple-driver' Apple driver filename where to extract the firmware. `-d' `--output-directory' The directory where to output the firmware. Defaults to /lib/firmware. `-f' `--output-filename' The output firmware name. Defaults to isight.fw `-?' `--help' Shows option help and quit. Since ift-extract defaults to output the firmware to /lib/firmware/isight.fw, ensure you have the right to do so. 3 Copying isight-firmware-tools is a project developped by A~Xtienne Bersac based on the work of Ronald S. Bultje, Johannes Berg and Ivan N. Zlatev. This manual has been written by A~Xtienne Bersac. Copyright (C) 2007 A~Xtienne Bersac <bersace@gmail.com> perl v5.14.2 2012-01-09 I2M19058(1)