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Full Discussion: Extract data from XML file
Top Forums Shell Programming and Scripting Extract data from XML file Post 302773507 by mohan sharma on Thursday 28th of February 2013 05:44:26 AM
Old 02-28-2013
Extract data from XML file
Hi ,
I have input file as XML. following are input data
#complex.xml
Code:
<?xml version="1.0" encoding="UTF-8"?>
<TEST_doc xmlns="http://www.w3.org/2001/XMLSchema-instance">
  <ENTRY uid="123456">
    <protein>
      <name>PROT001</name>
      <organism>Human</organism>
      <class>cytoplasmic</class>
    </protein>
    <xrefs>
      <xref>
          <database>Ensembl</database>
          <accn>ENSG00000105829</accn>
      </xref>
      <xref>
          <database>UNIPROT</database>
          <accn>Q12345</accn>
      </xref>
    </xrefs>
  </ENTRY>
  <ENTRY uid="45678">
    <protein>
      <name>PROT002</name>
      <organism>Human</organism>
      <class>nuclear</class>
    </protein>
    <xrefs>
      <xref>
          <database>Ensembl</database>
          <accn>ENSG00000105333</accn>
      </xref>
      <xref>
          <database>UNIPROT</database>
          <accn>Q14789</accn>
      </xref>
    </xrefs>
  </ENTRY>
</TEST_doc>

i want to extract data from this file and i tried below query.
cat complex.xml | xml sel -t -m //xref -v "concat(../../protein/name,' ',../../protein/class,' ',./database,' ',./accn)" -n

but it is not giving any output...but this query is working when instead of xmlns i am writing xmlns:xsi="...."
but my input file is having only xmlns="..."

please help me ...
Last edited by fpmurphy; 02-28-2013 at 09:53 AM..
 

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LEARN ABOUT DEBIAN

net::epp::frame::command::delete::domain

Net::EPP::Frame::Command::Delete::Domain(3pm)		User Contributed Perl Documentation	     Net::EPP::Frame::Command::Delete::Domain(3pm)

NAME

       Net::EPP::Frame::Command::Delete::Domain - an instance of Net::EPP::Frame::Command::Delete for domain names.

SYNOPSIS

	       use Net::EPP::Frame::Command::Delete::Domain;
	       use strict;

	       my $delete = Net::EPP::Frame::Command::Delete::Domain->new;
	       $delete->setDomain('example.tld');

	       print $delete->toString(1);

       This results in an XML document like this:

	       <?xml version="1.0" encoding="UTF-8"?>
	       <epp xmlns="urn:ietf:params:xml:ns:epp-1.0"
		 xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
		 xsi:schemaLocation="urn:ietf:params:xml:ns:epp-1.0
		 epp-1.0.xsd">
		   <command>
		     <delete>
		       <domain:delete
			 xmlns:domain="urn:ietf:params:xml:ns:domain-1.0"
			 xsi:schemaLocation="urn:ietf:params:xml:ns:domain-1.0
			 domain-1.0.xsd">
			   <domain:name>example.tldE<lt>/domain:name>
		       </domain:delete>
		     </delete>
		     <clTRID>0cf1b8f7e14547d26f03b7641660c641d9e79f45</clTRIDE<gt>
		   </command>
	       </epp>

OBJECT HIERARCHY

	   L<XML::LibXML::Node>
	   +----L<XML::LibXML::Document>
	       +----L<Net::EPP::Frame>
		   +----L<Net::EPP::Frame::Command>
		       +----L<Net::EPP::Frame::Command::Delete>
			   +----L<Net::EPP::Frame::Command::Delete::Domain>

METHODS

	       $frame->setDomain($domain_name);

       This specifies the domain name to be deleted.

AUTHOR

       CentralNic Ltd (http://www.centralnic.com/).

COPYRIGHT

       This module is (c) 2012 CentralNic Ltd. This module is free software; you can redistribute it and/or modify it under the same terms as Perl
       itself.

SEE ALSO

       o   Net::EPP::Frame

perl v5.14.2							    2012-04-23			     Net::EPP::Frame::Command::Delete::Domain(3pm)
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