02-14-2013
Hi Pamu,
Thanks for the suggestion ... as I mentioned I am a complete newbie and dont know how I would write the script at all. Please could you give me a more detailed example that I could test on my data?
Many thanks
10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Hi,
Can anyone let me know on how to convert a Tab delimited file to Comma delimited file in Unix
Thanks!! (22 Replies)
Discussion started by: charan81
22 Replies
2. Shell Programming and Scripting
Hi experts,
I need urget help! I have the a text file with this format:
Types of fruits
Name of fruits
1,1
Farm_no,1
apple,1
pineapple,1
grapes,1
orange,1
banana,1
2,2--->this is the record seperator
Farm_no,2
apple,1
pineapple,1
grapes,3
orange,2
banana,1
3,3--->this is the... (1 Reply)
Discussion started by: natalie23
1 Replies
3. UNIX for Advanced & Expert Users
Hi experts,
I need urget help! I have the a text file with this format:
Types of fruits
Name of fruits
1,1
Farm_no,1
apple,1
pineapple,1
grapes,1
orange,1
banana,1
2,2--->this is the record seperator
Farm_no,2
apple,1
pineapple,1
grapes,3
orange,2
banana,1
3,3--->this is the... (2 Replies)
Discussion started by: natalie23
2 Replies
4. Shell Programming and Scripting
Hi All,
I have space delimited file similar to the one as shown below.. I need to convert it as a pipe delimited, the values inside the pipe delimited file should be as highlighted...
AA ATIU2345098809 009697 005374
BB ATIU2345097809 005445 006518
CC ATIU9685098809 003215 003571
DD... (7 Replies)
Discussion started by: nithins007
7 Replies
5. Shell Programming and Scripting
Hi all,
How can i convert comma delimited .csv file to tab separate using sed command or script.
Thanks,
Krupa (4 Replies)
Discussion started by: krupasindhu18
4 Replies
6. UNIX for Dummies Questions & Answers
Hi,
I am not sure if I've posted this question before.
Anyway, I previously asked about converting lines of text into a comma delimited string. Now I am needing to do the other way around ... :( :o
Can anyone advise how is this possible?
Example as below:
Converting records/lines to... (2 Replies)
Discussion started by: newbie_01
2 Replies
7. UNIX for Dummies Questions & Answers
Hi, I have a rquirement in unix as below .
I have a text file with me seperated by | symbol and i need to generate a excel file through unix commands/script so that each value will go to each column.
ex:
Input Text file:
1|A|apple
2|B|bottle
excel file to be generated as output as... (9 Replies)
Discussion started by: raja kakitapall
9 Replies
8. Shell Programming and Scripting
Hi,
I am wanting to create a script that will construct a SQL statement based on a a space delimited string that it read from a config file.
Example of the SQL will be
For example, it will read a string like "AAA BBB CCC" and assign to a variable named IN_STRING.
I then concatenate... (2 Replies)
Discussion started by: newbie_01
2 Replies
9. Shell Programming and Scripting
I have file in linux with comma delimited and string fields in double quotations ", I need to convert them to pipe delimiter please share your inputs.
Example:
Input:
"2017-09-30","ACBD,TVF","01234",NULL,18,NULL,"686091802","BANK OF ABCD, LIMITED, THE",790456
Output:
... (4 Replies)
Discussion started by: shieksir
4 Replies
10. UNIX for Beginners Questions & Answers
Hi,
Apologies in advance to the moderator if I am posting this the wrong way.
I've searched and found the solution to an old post but as it is a very old post, I don't see an option to update it with additional question.
The question I have is in relation to the following post:
How to... (6 Replies)
Discussion started by: newbie_01
6 Replies
LEARN ABOUT DEBIAN
csv2mipe
CSV2MIPE(1) User Contributed Perl Documentation CSV2MIPE(1)
NAME
csv2mipe.pl - Generates MIPE file based on 3 tab-delimited files
based on MIPE version v1.1
arguments: * tab-delimited file with PCR-level data
* tab-delimited file with SNP-level data
* tab-delimited file with assay-level data
Columns in file with PCR-level data:
pcr_id
pcr_modified (might be multiple, divided by semi-colon ";")
pcr_project (might be multiple, divided by semi-colon ";")
pcr_researcher (might be multiple, divided by semi-colon ";")
pcr_species
source_type
source_id
design_seq
primer1_oligo
primer1_seq
primer1_tm
primer2_oligo
primer2_seq
primer2_tm
design_remark (might be multiple, divided by semi-colon ";")
use_seq
use_revcomp
use_remark (might be multiple, divided by semi-colon ";")
pcr_remark (might be multiple, divided by semi-colon ";")
Columns in file with SNP-level data:
pcr_id
snp_id
snp_pos
snp_amb
snp_remark (might be multiple, divided by semi-colon ";")
Columns in file with assay-level data:
pcr_id
snp_id
assay_id
assay_type
assay_enzyme
assay_oligo
assay_specific
assay_tail
assay_strand
assay_remark (might be multiple, divided by semi-colon ";")
SYNOPSIS
csv2mipe.pl <pcr_file.csv> <snp_file.csv> <assay_file.csv>
ADDITIONAL INFO
See http://mipe.sourceforge.net
AUTHOR
Jan Aerts (jan.aerts@bbsrc.ac.uk)
perl v5.14.2 2005-07-20 CSV2MIPE(1)