01-09-2013
The data_only , metadata_only options are available to know the content you want to dump from DB
10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Use the following to Change permission of fileB (fileB could be fileB*) to change its permission same as the permission of fileA.
chmod `ls -l fileA | awk '{pr
int "u+", substr($1,2,1), substr($1,3,1), substr($1,4,1), ",g+", substr($1,5,1),
substr($1,6,1), substr($1,7,1), ",o+",... (0 Replies)
Discussion started by: gagansharma
0 Replies
2. UNIX for Advanced & Expert Users
So I need to change the permissions of my user account. I can
access the root account on the server, but don't know how to
change the permissions of my user account. I was advised to
try 'userconf' to see if I am part of a group, but I dunno how that works. ANyone who knows how to see the... (3 Replies)
Discussion started by: achink125
3 Replies
3. UNIX for Advanced & Expert Users
Hello !
When I connect to a RH FTP server, the files I transfer (from my "windows computer") to this server have the following permissions : -rw------- but I would like those files to have the following permissions : - rw-rw-r-x
How can I do that ??? :)
Thanks for your help !
G. (6 Replies)
Discussion started by: guix
6 Replies
4. UNIX for Dummies Questions & Answers
How can I change the default permissions that are assigned when I create a file? (By default the file has: -rw-r--r-- ..... I'd like it to be -rw-r-----
How can I change this default behavior? (8 Replies)
Discussion started by: FredSmith
8 Replies
5. UNIX for Dummies Questions & Answers
Is there a way to change a unix user's default file permissions so that when he creates a file, by default permissions are 777???
Thanks! (7 Replies)
Discussion started by: FredSmith
7 Replies
6. Cybersecurity
I'm doing a security sweep of a Sun Sol 5.8 system. The file: /dev/console, which links to /devices/pseudo/cn@0:console, has the following perms: crw--w--w- I would like to get rid of the world write permissions. I can change the file permissions, but as soon as log back in, they are changed... (4 Replies)
Discussion started by: ErnieG
4 Replies
7. Shell Programming and Scripting
does anyone know how to write a script that will change file permissions. because the Admin blocked me from altering any of my files im only allowed to read and i heard a script like this can bypass it but i dont know how to write it.
Display current users. Display user Ids only.
Display... (10 Replies)
Discussion started by: live2learn
10 Replies
8. Homework & Coursework Questions
Use and complete the template provided. The entire template must be completed. If you don't, your post may be deleted!
1. The problem statement, all variables and given/known data:
Write a shell script that gives a passed file the "755" access permissions. The shell script should:
Change... (0 Replies)
Discussion started by: anix007
0 Replies
9. Homework & Coursework Questions
Use and complete the template provided. The entire template must be completed. If you don't, your post may be deleted!
1. The problem statement, all variables and given/known data:
Write a shell script that gives a passed file the "755" access permissions. The shell script should:
Change... (5 Replies)
Discussion started by: anix007
5 Replies
10. UNIX for Dummies Questions & Answers
Hello All,
I am application admin. I need to clear all the temporary files cleared by the applications. I need help/suggestion that is there any way to create a file system such that every Dir created in by any user will have 775 permissions. So, that i can simply clear the temporary file which... (6 Replies)
Discussion started by: firestar
6 Replies
LEARN ABOUT DEBIAN
bp_classify_hits_kingdom
BP_CLASSIFY_HITS_KINGDOM(1p) User Contributed Perl Documentation BP_CLASSIFY_HITS_KINGDOM(1p)
NAME
classify_hits_kingdom - classify BLAST hits by taxonomic kingdom
USAGE
classify_hits_kingdom [-i tab_file] [-i second_BLAST_file] [-e evalue_cutoff]
[-t dir_where_TAXONOMY_files_are] [-g gi2taxid]
[-z PATH_TO_zcat] [-v]
DESCRIPTION
Will print out the taxonomic distribution (at the kingdom level) for a set of hits against the NR database. This script assumes you've
done a search against the protein database, you'll have to make minor changes in the gi_taxid part to point to the gi_taxid_nuc.dump file.
This expects BLAST files in tabbed -m9 or -m8 format. Output with -m 8 or use blast2table.pl to convert (or fastam9_to_table.PLS if using
FASTA).
Input values:
-t/--taxonomy directory where the taxonomy .dmp files are (from NCBI)
-g/--gi Location of gi_taxid_prot.dmp (or gi_taxid_nucl.dmp if
the search was against a NT db)
-i/--in The name of the tab delimited -m8/-m9 output files to
process.
-e/--evalue Provide an E-value cutoff for hits to be considered
-z/--zcat Path to the 'zcat' executable, can also be 'gunzip -c'
if no zcat on your system.
Flags
-v/--verbose To turn on verbose messages
-h/--help Display this helpful information
This is intended to be useful starting script, but users may want to customize the output and parameters. Note that I am summarizing the
kingdoms here and Eukaryota not falling into Metazoa, Viridiplantae, or Fungi gets grouped into the general superkingdom Eukaryota. for
simplicity. There are comments in the code directing you to where changes can be made if you wanted to display hits by phylum for example.
Note that you must wipe out the cache file 'gi2class' that is craeed in your directory after making these changes.
AUTHOR
Jason Stajich jason_at_bioperl_dot_org
perl v5.14.2 2012-03-02 BP_CLASSIFY_HITS_KINGDOM(1p)