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Full Discussion: Help in awk/bash
Top Forums Shell Programming and Scripting Help in awk/bash Post 302750057 by bioinfo on Sunday 30th of December 2012 10:40:36 PM
Old 12-30-2012
Hi,
Thanks a lot , I have done it. Smilie
I have got the following output for all files (just showing for one file and naming it as o.txt) :
Code:
100.000        0.51332	   0.0000001923	 -191.04738     a.txt
2000.000	   0.49573	   0.0000015512	 -191.40071     a.txt
1000.000	   0.51047	   0.0000028339	 -190.92254     a.txt

Further, I need your help. I have 10 more files, all of same format (11.txt) as follows, showing 2 repeats from this file:
Code:
ATOM      1  N    SER A   1      35.092  83.194 140.076  1.00  0.00           N  
ATOM      2  CA  SER A   1      35.216  83.725 138.725  1.00  0.00           C  
ATOM      3  C    SER A   1      36.530  84.485 138.538  1.00  0.00           C  
TER
ENDMDL
ATOM      1  N   SER A   1      35.683  81.326 139.778  1.00  0.00           N  
ATOM      2  CA  SER A   1      35.422  82.736 139.929  1.00  0.00           C  
ATOM      3  C   SER A   1      36.497  83.588 139.247  1.00  0.00           C  
TER
ENDMDL

ENDMDL is coming around 10000 times in each file. If I give input of 100 at $1 from o.txt, then it should output the first repeat from 11. txt ending with ENDMDL.
Code:
ATOM      1  N    SER A   1      35.092  83.194 140.076  1.00  0.00           N  
ATOM      2  CA  SER A   1      35.216  83.725 138.725  1.00  0.00           C  
ATOM      3  C    SER A   1      36.530  84.485 138.538  1.00  0.00           C  
TER
ENDMDL

So, corresponding to first column of o.txt, I want to retreive the repeat at the number $1/100 from 11.txt i.e. if $1=2000, then I want to retreive the pattern where ENDMDL is at 20 place.


Please guide me.

Thanks again

---------- Post updated at 10:40 PM ---------- Previous update was at 09:52 PM ----------

Please guide me. Its urgent. Smilie

Thanks

Last edited by Scrutinizer; 12-31-2012 at 03:53 AM.. Reason: code tags
 

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ECACCESS-FILE-MOVE(1p)					User Contributed Perl Documentation				    ECACCESS-FILE-MOVE(1p)

NAME
ecaccess-file-move - Move or Rename ECaccess Files SYNOPSIS
ecaccess-file-move -version|-help|-manual ecaccess-file-move [-debug] source-ecaccess-file target-ecaccess-file DESCRIPTION
Allow moving an ECaccess File. When the move occurs within the same ECaccess File System then it is a rename. When the move occurs across two different ECaccess File Systems then first a copy is done and then a delete of the original file is done (e.g. similar to ecaccess- file-copy ... -erase). The source-ecaccess-file and target-ecaccess-file are in the form [domain:][/user-id/]path. Please read the "Shell commands -> File Management" section of the "ecaccess" guide for more information on the ECaccess File System. ARGUMENTS
source-ecaccess-file The source ECaccess File name. target-ecaccess-file The target ECaccess File name. OPTIONS
-version Display version number and exits. -help Print a brief help message and exits. -manual Prints the manual page and exits. -debug Display the SOAP messages exchanged. EXAMPLES
ecaccess-file-move ec:test1.txt ec:test2.txt Rename the test1.txt file in the ECFS directory of the authenticated user in test2.txt. ecaccess-file-move ec:test1.txt home:test2.txt Copy the test1.txt file from the ECFS directory of the authenticated user to the test2.txt file in the $HOME directory of the authenticated user, then delete the test1.txt file from ECFS. SEE ALSO
ecaccess-file-delete, ecaccess-file-get, ecaccess-file-mget, ecaccess-file-modtime, ecaccess-file-mput, ecaccess-file-rmdir, ecaccess-file- copy, ecaccess-file-dir, ecaccess-file-mdelete, ecaccess-file-mkdir, ecaccess-file-chmod, ecaccess-file-put, ecaccess-file-size and ecaccess. perl v5.14.2 2012-04-16 ECACCESS-FILE-MOVE(1p)
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