That sounds like a simple printf specifier.
Code:
awk whatever ... |
awk '{ printf ("%5s%6s%9s%5s%3s%35s%s\n", $1, $2, $3, $4, $5, $6, $7) }'
(Sorry, might have miscalculated the width of a few fields. Modifying the earlier script to do this is itself is probably not too hard either.)
I don't see anything which would be reducing $6 to just two characters.
